Really, a starship bridge would be more inside the vessel, but for aesthetics relating to sailing ships, having a bridge that can be prominantprominent and easily located is natural. Let's face the fact that even though the enterprise is'ntEnterprise isn't designed to enter the atmosphere of a planet, it still is shown as being upright even relation to other spaceships even though there is no up or down in space.Now some ships like the defiant class have enclosed bridges, and less prominant profiles. And in later star trekStar Trek shows, you see the full use of xyzXYZ axis manuevering, as well in the jj abramsJ.J. Abrams movies. In real life, the beautiful shapes of the trekTrek starships we all love wouldn't be practical designs.