Hmm, I'm not sure; but I suppose this could be Dragonfall 5 and the Master Mind (1975)
Dragonfall 5 is about a family (presumably British) - Tim, Sanchez, Old Elias and Big Mother - living in a nondescript part of the 3rd millennium, travelling along various planets in their aging, nearly obsolete spaceship called the Dragonfall 5. They transport goods, passengers and other items to a variety of worlds. As well as the four humans, their crew includes a pet dog called Jerk, who is a breed of flying hounds who can glide using his long ears. They also have several small rodent-like animals called Minims. They always work in groups of three, and can jointly translate most alien languages. In the Royal Beast there were at least six Minims on the ship.
....
Dragonfall 5 and the Master Mind (1975): Its climate system expertly managed by a Super Computer, a planet of rabbits is puzzled by the sudden flooding that has broken out. Dragonfall 5 is hired to ship grain to the rabbit clans, split into White and Black tribes, but Tim and Sanchez will be required to travel deep into the flooded tunnels to seek out the Master Mind for answers.
