What happens to the mystery organization that creates and enslaves mutants?
This workshop doesn't make superheroes, we make superslaves. We're gonna fit you with a control collar and auction you off to the highest bidder.
Ajax was a patient at the facility suggesting that he is not the head of the organization; although he brokers deals and is in command of Angel.
I'm about to hurt you, Wade. I was a patient here once myself, you know.
At the end of the movie, Ajax is dead along with Agent Smith, a bunch of goons and everyone on Wade's giant web of photographs.