After reading this question, I remember wondering about this while watching the movie:
In Spider-Man: Far From Home,
When Spider-Man tries to get a pass from helping fight the Elementals, he brings up names of people who can help instead of him. Fury has an answer for each name, but when Spider-Man suggested Captain Marvel, Fury's response was really strict and he was not willing to even consider hearing about it.
However, in Captain Marvel
I remember them being in good terms. Even somehow friendly.
When was that change of relations?