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In Batman: The Animated Series, Batman uses his computer to break into the other systems (Police, Other Companies, etc).
In any continuity/universe, did Batman get into trouble for computer hacking?
Yes in the Batman Arkham Origins video game when you have to break into the police station you hack a computer with Barb’s help.
Batman fights the entire police force before he gets out and nearly gets arrested.
Here’s a picture of him creeping behind a cop in the game.
Required, but never shown