Per gadams999's own answer, the books in question are the duology "Signal to Noise" and "A Signal Shattered" by Eric S. Nylund. Plot summary from the Wikipedia page for "Signal to Noise":
The novel follows Jack Potter, a computer cryptographer tenured at the fictional Academe of Pure and Applied Sciences in Santa Sierra,
California (a city assembled from the ruins of San Francisco.) The
story details Jack's first encounter with an alien calling himself
Wheeler who apparently wishes to trade information with humanity.
Accompanied (for a while) by "gene witch" Zero al Qaseem and data paleontologist Isabel Mirabeau, Jack establishes a corporation based
around one of the technologies he was traded by Wheeler, but soon
finds that there may be more to his dealings with the alien than he
bargained for. Traitorous alliances, deceitful propaganda, and shady
business practices are frequent elements of the novel.