In Marvel's Cinematic Universe, it has been shown that
Hydra followers have secretly infiltrated the S.H.I.E.L.D. over several decades.
Council members of S.H.I.E.L.D. are dead.
Nick Fury is officially dead and he is living into exile.
Captain America: The Winter Soldier and the last episode (S01E17) of Marvel's Agents of S.H.I.E.L.D. have actively shown this.
Marvel once said in Marvel Studios: Assembling a Universe that they have a lot of stuff from comics, that they can bring to Marvel's Cinematic Universe. So, I was wondering if current situation of S.H.I.E.L.D. ever been encountered in comics.
Has S.H.I.E.L.D. ever been doomed in comics? What happened after that?