Sounds like **Netstorm: Islands at War**.

Played 15 to 18 years ago - it was released in 1997, so entirely possible

Took place in the sky - check

Collect crystals - check

Construct bases - well towers

Had mules - the workers were horse/mule type characters

Enemies on seperate islands - check

Scorpion like enemy - I could see how some of the enemies could resemble a robot scorpion.

Build bridges - check

That would fall down - they could be taken over, I can't remember if they could be destroyed.

Top down view - see below

![From Wikipedia ](https://i.sstatic.net/B9jQB.jpg)![enter image description here](https://i.sstatic.net/KAmIK.jpg)