Never. Count. That. Film.
The 2006 film was not canon. The 2006 film did not follow continuity. The 2006 film, for all intents and purposes was a filthy money-grab attempt and should never be spoken of again.
ANYWAY, the books give a much better estimation of the fell dragon's size. If you've read the books, you'd know that the party eventually encounters Shruikan, and at first mistake his side for a strangely patterned wall in a massive, massive audience chamber.
I hesitate to say more, as it seems like you haven't read the novels, and I wish not to spoil anything. But read the books, they are wonderful and will answer this question eventually.
Edit: screw it, spoil'ahs ahead!
At the end of the final book, Eragon and co. make their way to Galbatorix's throne room. This room is friggin massive. One entire wall is covered in a decorative curtain. During the confrontation w/ Galby, that curtain...moves. It wasn't a curtain, but rather the wing of a massive dragon (Shruikan). Shruikan is freaking massive. He takes up a huge secondary-chamber to the massive throne-room.