In which issues did Professor X let Scott down?

Question

During the Messiah Complex, Scott (Cyclops) gives Professor X a dressing down and mentions several times he's let Scott down

• Left brother in space (Havok/Vulcan)
• Lied about the danger room
• Lied about Krakoa
• Let Scott's father be killed

I don't recognise any of these events, when did they happen?

Answer 1

• Left brother in space
• Lied about Krakoa

The mini-series X-Men: Deadly Genesis.

• Lied about the danger room

Astonishing X-Men vol. 3 #11-12. Collected in Astonishing X-Men: Dangerous.

• Let Scott's father be killed

Uncanny X-Men vol. 1 #486. Collected in Uncanny X-Men: Rise and Fall of the Shi'ar Empire.